Next Generation Precision Medicine Program

There is an urgent need for new and more precisely targeted medicines to treat childhood cancers. Currently, genomic sequencing is used to identify discrete mutations that could predict a child’s responses to targeted therapies. However, fewer than one in five children with cancer are found to have actionable mutations. And of those children, only half respond to the therapies that are available.

Next Generation Precision Medicine Program Group Photo
Next Generation Precision Medicine Program team and collaborators

New treatment options are needed, particularly for paediatric cancers that have the poorest survival rates such as brain and soft tissue tumours.

The Next Generation Precision Medicine Program is led by Hudson Institute’s Professor Ron Firestein, a clinician-scientist and the Head of the Centre for Cancer Research at Hudson Institute. The Program is focused on

  • Generating novel models of childhood cancers that faithfully represent a patient’s tumour
  • Characterising those models at a multi-omics level (genome, transcriptome, epigenome, proteome) to find what makes them unique
  • Using comprehensive functional genomic screens that can identify the genetic drivers and dependencies of low-survival paediatric cancers
  • Developing a childhood cell line atlas and data portal to enable cohort-level integrative genomic analyses.

Childhood Cancer Model Atlas (CCMA)

The Childhood Cancer Model Atlas (CCMA) was created through this program. As the largest collection of high-risk paediatric solid tumour cell lines in the world, the CCMA is one of the most valuable resources available for childhood cancer researchers globally. It provides a collection of well annotated and characterised models of childhood cancer with associated functional genomics screens and includes a searchable data portal that can be accessed by scientists worldwide. This open-source approach, couple with precise, detailed data, helps scientists anywhere collaborate and drive clinical translation to help sick children.

Team members

Professor Ron Firestein
Centre Head, Centre for Cancer Research and Co-lead, VPCC

Naama Neeman Director of Operations VPCC

Naama Neeman
Head of Program Operations, Childhood Cancer

Dr Xin (Claire) Sun

Dr Xin (Claire) Sun
Bioinformatics Team Leader

Dr Paul Daniel is a Senior Postdoctoral Research Fellow for the Hudson Monash Paediatric Precision Medicine Program at Hudson Institute

Dr Paul Daniel
Senior Postdoctoral Research Fellow

Rajithri (Dilru) Habarakada

Rajithri (Dilru) Habarakada
Biobank Specialist

Nicole Chew, Children's Cancer Foundation Senior Organoid Specialist

Dr Nicole Chew
Senior Organoid Specialist

Dr Yuxin (Sally) Sun is the Cooper Rice-Brading Foundation - Sarcoma Research Specialist

Dr Yuxin (Sally) Sun
Cooper Rice-Brading Foundation – Sarcoma Research Specialist

Dr Hanbyeol Lee, Postdoctoral Scientist for the Centre for Cancer research at Hudson Institute.

Dr Hanbyeol Lee
Postdoctoral Scientist

Vikesh Ajith from the Centre for Cancer Research at Hudson Institiute

Vikesh Ajith
Bioinformatics Data Engineer

Shazia Adjumain Photo

Shazia Adjumain
Postdoctoral Researcher – funded by Robert Connor Dawes Foundation

James Cooper, Honorary Research Associate, Centre for Cancer Research at Hudson Institute

James Cooper
Research Assistant

Yichen Zhou, Centre for Cancer Research at Hudson Institute

Dr Yichen Zhou
Postdoctoral Scientist

Dr Danxi Zhu from the Cancer Genetics and Functional Genomics Research Group at Hudson Institute

Dr Danxi Zhu
Postdoctoral Scientist

Dr Yuqing Liang is a Children’s Cancer Foundation PhD Student, and is part of the Next Generation Precision Medicine team.

Dr Yuqing Liang
Children’s Cancer Foundation PhD Student

Samitha Amarapathy, VPCC Next Generation Precision Medicine

Samitha Amarapathy
PhD student, Faculty of IT, Monash University

Angie is an Honours student with the Next Generation Precision Medicine program, led by Prof Ron Firestein.

Angie Bitticaca
Honours Student

Bao Le
Junior Research Assistant

Dingyin Sun PhD Student in the Centre for Cancer Research at Hudson Institute

Dingyin Sun
PhD Student

Xinyi Guo
Bioinformatics Research Assistant

Karyn Tjahyadi is a visitor with the Next Generation Precision Medicine program in CCR

Karyn Tjahyadi 
Visiting scholar

Ishika Mahajan works with the Next Generation Precision Medicine program, led by Professor Ron Firestein.

Ishika Mahajan
Research Assistant – Volunteer

Yiwen Guan works with the Next Generation Precision Medicine program, led by Professor Ron Firestein

Yiwen Guan
Research Assistant – Volunteer

Rafia Ahmed
Vacation Student

Collaborators

Prof David Eisenstat  – The Royal Children’s Hospital/Murdoch Children’s Research Institute

A/Prof Peter Downie  – Monash Children’s Hospital

A/Prof Sefi Rosenbluh  – Monash University

A/Prof Paul Ekert – Children’s Cancer Institute

Prof Roger Daly – Monash University

Dr Pouya Faridi – Monash University

A/Prof Paul Neeson – Peter MacCallum Cancer Centre 

Learn more about VPCC